May 2010, Zhang Q, Zmasek CM, Godzik A.
Domain architecture evolution of pattern-recognition receptors. Immunogenetics. 2010, was selected in
Faculty of 1000 Biology
April 2009, Cho DH, Nakamura T, Fang J, Cieplak P, Godzik A, Gu Z, Lipton SA.
S-nitrosylation of Drp1 mediates beta-amyloid-related mitochondrial fission and neuronal injury.
Science. 2009 Apr 3 324(5923):102-5, was selected in
Faculty of 1000 Biology
October 2009, Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A, Science, 2009 Sep 18, was selected in Faculty of 1000 Biology as a must-read paper.
November 2008, Zhang Q and Zmasek CM et al,
Genome Biol, 2008, was selected in
Faculty of 1000 Biology.
December 2007, CD-HIT paper was selected as a
Fast Breaking Paper.
Read fast breaking comments
by Weizhong Li.
November 2007, Zmasek CM and Zhang Q et al, Genome Biol, 2007, was selected in
Faculty of 1000 Biology.
January 2005, Ye Y and Godzik A, Bioinformatics, 2005
was selected in Faculty of 1000 Biology.
May 2004, Ye Y and Godzik A, Bioinformatics, 2003
was selected in Faculty of 1000 Biology.
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Zhang Q, Zmasek CM, Godzik A.
Domain architecture evolution of pattern-recognition receptors.
Immunogenetics. 2010 May;62(5):263-72.
PubMed
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Cho DH, Nakamura T, Fang J, Cieplak P, Godzik A, Gu Z, Lipton SA.
S-nitrosylation of Drp1 mediates beta-amyloid-related mitochondrial fission and neuronal injury.
Science. 2009 Apr 3 324(5923):102-5,
PubMed
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Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA,
Palsson B, Osterman A, Godzik A,
Three-dimensional structural view of the central metabolic network of Thermotoga maritima.
Science, 2009 Sep 18;325(5947):1544-9.
PubMed
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Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik,
Exploration of Uncharted Regions of the Protein Universe.
Plos Biology. 2009 Sep. 7(9):e1000205
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Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A.
Genome pool strategy for structural coverage of protein families.
Structure. 2008 Nov 12;16(11):1659-67.
PubMed
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Li W, Wooley JC, Godzik A.
Probing metagenomics by rapid cluster analysis of very large datasets.
PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.
PubMed
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Igarashi Y, Heureux E, Doctor KS, Talwar P, Gramatikova S, Gramatikoff K,Zhang Y, Blinov M, Ibragimova SS, Boyd S, Ratnikov B, Cieplak P, Godzik A, Smith JW, Osterman AL, Eroshkin AM.
PMAP: databases for analyzing proteolytic events and pathways.
Nucleic Acids Res. 2009 Jan;37(Database issue):D611-8. Epub 2008 Oct 8.
PubMed
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Veeramalai M, Ye Y, Godzik A.
TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model.
BMC Bioinformatics. 2008 Aug 31;9(1):35
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Zhang Q, Zmasek CM, Dishaw LJ, Mueller MG, Ye Y, Litman GW, Godzik A.
Novel genes dramatically alter regulatory network topology in amphioxus.
Genome Biol. 2008 Aug 4;9(8):R123.
PubMed
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Zmasek CM, Zhang Q, Ye Y, Godzik A.
Surprising complexity of the ancestral apoptosis network.
Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]
PubMed
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Schwarzenbacher R, Godzik A, Jaroszewski L.
The JCSG MR pipeline: optimized alignments, multiple models and parallel searches.
Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.
PubMed
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Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A.
XtalPred: a web server for prediction of protein crystallizability.
Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.
PubMed
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Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A.
The challenge of protein structure determination--lessons from structuralgenomics.
Protein Sci. 2007 Nov;16(11):2472-82.
PubMed
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Zhang Y, Stec B, Godzik A.
Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins.
Structure. 2007 Sep;15(9):1141-7.
PubMed
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Grynberg M, Li Z, Szczurek E, Godzik A.
Putative type IV secretion genes in Bacillus anthracis.
Trends Microbiol. 2007 May;15(5):191-5. Epub 2007 Mar 26.
PubMed
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Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A,Mustelin T.
Identification and characterization of DUSP27, a novel dual-specific proteinphosphatase.
FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.
PubMed
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Friedberg I, Godzik A.
Functional differentiation of proteins: implications for structural genomics.
Structure. 2007 Apr;15(4):405-15.
PubMed
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Rodrigues AP, Grant BJ, Godzik A, Friedberg I.
The 2006 automated function prediction meeting.
BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.
PubMed
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Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A.
Using an alignment of fragment strings for comparing protein structures.
Bioinformatics. 2007 Jan 15;23(2):e219-24.
PubMed
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Sasin JM, Godzik A, Bujnicki JM.
SURF'S UP! - protein classification by surface comparisons.
J Biosci. 2007 Jan;32(1):97-100.
PubMed
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Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A.
CutDB: a proteolytic event database.
Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.
PubMed
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Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D.
Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors.
Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.
PubMed
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Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L,
Cieplak P, Miller CS, Li H,Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y,Natarajan K, Lee S,
Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A,Eisenberg D, Dixon JE, Taylor SS, Strausberg RL, Frazier M, Venter JC.
The Sorcerer II Global Ocean Sampling expedition: expanding the universe ofprotein families.
PLoS Biol. 2007 Mar;5(3):e16.
PubMed
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